pepseq, branch master Peptide sequencing http://git.jbernard.io/pepseq/atom?h=master 2011-07-06T23:01:53Z Fix sub weight calculation 2011-07-06T23:01:53Z Jon Bernard jbernard@tuxion.com 2011-07-06T23:01:53Z urn:sha1:9b05679b3c42607415126c32f6fef08ed795e90e Look for branching K in the correct position 2011-07-06T23:01:24Z Jon Bernard jbernard@tuxion.com 2011-07-06T23:01:24Z urn:sha1:a2f7dfdc109e9810fd33a7e6871140dc4ef31e4c Reconfigure input parsing for new input set 2011-06-04T14:02:47Z Jon Bernard jbernard@tuxion.com 2011-06-04T13:59:25Z urn:sha1:5835a0cadda28041248de606bfa0e708b54b8513 This really needs to be rewritten for future iterations. Add Borono Phenylalanine (Z) to the amino acid table 2011-06-02T18:33:21Z Jon Bernard jbernard@tuxion.com 2011-06-02T18:33:21Z urn:sha1:7b00448cbadec0ab9be73e7462afc57c3dba0f3a Fix B naming mistake in amino acid table 2011-06-02T18:32:50Z Jon Bernard jbernard@tuxion.com 2011-06-02T18:32:50Z urn:sha1:b270e4eae476738fddb1ff6374a2fca730836608 Add config file parsing and subweights 2011-03-15T02:29:00Z Jon Bernard jbernard@tuxion.com 2011-03-15T02:29:00Z urn:sha1:ef8b3b877b537005ad2fcefb002aeb9c6bebddf2 Add unit test for Borono Phenylalanine amino acid 2010-10-27T02:24:19Z Jon Bernard bernardj@gmail.com 2010-10-27T02:24:19Z urn:sha1:3a3260e8cb7e654acade962ce5a79783e8470b2e This amino acid is not naturally forming, it is synthesized in a lab environment. Add lysine branching 2010-10-27T02:20:28Z Jon Bernard bernardj@gmail.com 2010-10-27T02:20:28Z urn:sha1:3a38b0738a45e417a2ab6b3b0d53e82daf965a10 Refactor and cleanup bin/pepseq 2010-10-27T02:18:24Z Jon Bernard bernardj@gmail.com 2010-10-27T02:18:24Z urn:sha1:55b32df671c330e5a041a1d2da0ac0f20db9d74d Create sorted peptides from generated sequences 2010-09-27T09:20:30Z Jon Bernard bernardj@gmail.com 2010-09-27T09:20:30Z urn:sha1:f37577fbe8d80b0aefc239b501d6a4ee94b886a2