pepseq - Peptide sequencing

Age	Commit message (Collapse)	Author	Lines
2011-07-06	Fix sub weight calculationHEAD master	Jon Bernard	-1/+0

2011-07-06	Look for branching K in the correct position	Jon Bernard	-1/+1

2011-06-04	Reconfigure input parsing for new input set	Jon Bernard	-18/+12
	This really needs to be rewritten for future iterations.
2011-06-02	Add Borono Phenylalanine (Z) to the amino acid table	Jon Bernard	-0/+1

2011-06-02	Fix B naming mistake in amino acid table	Jon Bernard	-1/+1

2011-03-14	Add config file parsing and subweightsv1	Jon Bernard	-38/+144

2010-10-26	Add unit test for Borono Phenylalanine amino acid	Jon Bernard	-0/+7
	This amino acid is not naturally forming, it is synthesized in a lab environment.
2010-10-26	Add lysine branching	Jon Bernard	-35/+56

2010-10-26	Refactor and cleanup bin/pepseq	Jon Bernard	-23/+32

2010-09-27	Create sorted peptides from generated sequences	Jon Bernard	-9/+26

2010-09-26	Add initial sequence generation	Jon Bernard	-40/+24

2010-09-23	Add class and tests for amino acids	Jon Bernard	-6/+239

2010-09-18	Remove unnecessary template code	Jon Bernard	-109/+21
	Quickly includes support for several features (eg. data directory) that I find unnecessary for this project. Strip out all that crap and simplify setup.py. Who wants a python application that can only build on recent versions of Ubuntu?
2010-09-18	Initial commit	Jon Bernard	-0/+197